Quast - Quality Report For Assembled Contigs
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Evaluate genome assembly by standard metrics, such as N50, number of contigs, length of contigs.
Metrics are summarised in an HTML, PDF and text reports.

**Location**

- *Filepath:* <SnakeLines_dir>/rules/paired_end/assembly/report/quality_report/quast.snake
- *Rule name:* quast__quality_report_for_assembled_contigs

**Input(s):**

- *contigs:* Assembled configs in fasta format

**Output(s):**

- *txt:* Quality report statistics in text format suitable for automated evaluation
- *html:* Quality report statistics in HTML format
- *pdf:* Quality report statistics in Pdf format