Samtools - Convert Sam To Bam --------------------------------- Convert .bam to .sam. **Location** - *Filepath:* /rules/shared/mapping/index/samtools.snake - *Rule name:* samtools__convert_sam_to_bam **Input(s):** - *bam:* Mapped reads in bam format **Output(s):** - *sam:* Mapped reads in sam format Samtools - Bam Index ------------------------ Generate .bai index to .bam files to quick recover reads from genomic location of interest. **Location** - *Filepath:* /rules/shared/mapping/index/samtools.snake - *Rule name:* samtools__bam_index **Input(s):** - *bam:* Mapped reads in bam format **Output(s):** - *bai:* Index to mapped reads for enable fast read retrieval from desired genomic region