Fastqc - Html Summary For Joined Reads
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Aggregate quality control results from all FastQC reports and generate summary HTML table with
PASS/WARN/FAIL icons
**Location**
- *Filepath:* /rules/single_end/reads/report/quality_report/fastqc.snake
- *Rule name:* fastqc__html_summary_for_joined_reads
**Input(s):**
- *fastq_files:* All joined Fastq files to quality report
**Output(s):**
- *summary:* HTML report with summary statistics of multiple fastq files
Fastqc - Html Summary For Paired Reads
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Aggregate quality control results from all FastQC reports and generate summary HTML table with
PASS/WARN/FAIL icons
**Location**
- *Filepath:* /rules/single_end/reads/report/quality_report/fastqc.snake
- *Rule name:* fastqc__html_summary_for_paired_reads
**Input(s):**
- *fastq_files:* All Fastq files to quality report
**Output(s):**
- *summary:* HTML report with summary statistics of multiple fastq files
Fastqc - Quality Report
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Generate HTML report with plots assessing various quality control aspects of NGS reads
**Location**
- *Filepath:* /rules/single_end/reads/report/quality_report/fastqc.snake
- *Rule name:* fastqc__quality_report
**Input(s):**
- *reads:* Sequenced reads in fastq format
**Output(s):**
- *html:* Quality report in HTML format
- *txt:* Quality report in text format suitable for automated processing