Vardict - Create Wgs Bed File --------------------------------- Creates bed file with whole genomic regions in reference fasta file. Simple way to unite WGS and panel analysis. **Location** - *Filepath:* /rules/variant/caller/vardict.snake - *Rule name:* vardict__create_wgs_bed_file **Input(s):** Vardict - Prepare Bed File ------------------------------ Vardict throws error for bed files with more than 4 columns, rule therefore cut other columns **Location** - *Filepath:* /rules/variant/caller/vardict.snake - *Rule name:* vardict__prepare_bed_file **Input(s):** Vardict - Call Germline Variants ------------------------------------ Identify small variation (SNP and indels) from the mapped reads. **Location** - *Filepath:* /rules/variant/caller/vardict.snake - *Rule name:* vardict__call_germline_variants **Input(s):** Vardict - Test Strand Bias ------------------------------ Perform statistical testing of strand bias. **Location** - *Filepath:* /rules/variant/caller/vardict.snake - *Rule name:* vardict__test_strand_bias **Input(s):** Vardict - Tsb To Vcf ------------------------ Convert intermediate files of Vardict to VCF format **Location** - *Filepath:* /rules/variant/caller/vardict.snake - *Rule name:* vardict__tsb_to_vcf **Input(s):**