Samtools - Bam IndexΒΆ

Generate .bai index to .bam files to quick recover reads from genomic location of interest.

Location

  • Filepath: <SnakeLines_dir>/rules/mapping/index/samtools.snake
  • Rule name: samtools__bam_index

Input(s):

  • bam: Mapped reads in bam format

Output(s):

  • bai: Index to mapped reads for enable fast read retrieval from desired genomic region