Bandage - Visualise Contig Overlaps

Plot overlap graph of contigs to visually inspect relationships between contigs.

Location

• Filepath: <SnakeLines_dir>/rules/paired_end/assembly/report/assembly_graph/bandage.snake
• Rule name: bandage__visualise_contig_overlaps

Input(s):

• gfa: Assembly graph in .fastg format

Output(s):

• svg: Graphical visualisation of overlaps between contigs - graph representation