Custom - Alpha Diversity

Compute aplha diversity at selected taxonomic level, such as genus, species.

Location

• Filepath: <SnakeLines_dir>/rules/paired_end/classification/report/taxonomic_counts/alpha_diversity/custom.snake
• Rule name: custom__alpha_diversity

Input(s):

• tax_level_abs: Aggregated counts for single taxonomic level, e.g. species, order

Output(s):

• alpha_div: Alpha diversities for single taxonomic level, e.g. species, order; either ‘_norm’-alized to the same counts or kept ‘_pure’.