Bamtools - Merge Bams Into Single Bam FileΒΆ
Merge mapped reads in BAM files into a single BAM file
Location
- Filepath: <SnakeLines_dir>/rules/shared/mapping/merged/bamtools.snake
- Rule name: bamtools__merge_bams_into_single_bam_file
Input(s):
- bams: BAM files with mapped reads
Output(s):
- bam: single BAM file with all reads from input BAM files
- list: List of files that were used for merging (one line per file)