Bamtools - Merge Bams Into Single Bam FileΒΆ

Merge mapped reads in BAM files into a single BAM file

Location

  • Filepath: <SnakeLines_dir>/rules/shared/mapping/merged/bamtools.snake
  • Rule name: bamtools__merge_bams_into_single_bam_file

Input(s):

  • bams: BAM files with mapped reads

Output(s):

  • bam: single BAM file with all reads from input BAM files
  • list: List of files that were used for merging (one line per file)