Iqtree - Infer PhylogenyΒΆ

Infer phylogenetic relationships between aligned sequences

Location

  • Filepath: <SnakeLines_dir>/rules/shared/reference/phylogeny/iqtree.snake
  • Rule name: iqtree__infer_phylogeny

Input(s):

  • alignment: Aligned sequences in ALN format

Output(s):

  • tree: Phylogenetic tree with distances between sequences

Param(s):

  • model: Model to use for phylo tree generation - see iqtree documentation for more detail