Trimmomatic - Trim ReadsΒΆ
Remove low quality ends of reads and then filter reads that are too short.
Location
- Filepath: <SnakeLines_dir>/rules/paired_end/reads/preprocess/trimmed/trimmomatic.snake
- Rule name: trimmomatic__trim_reads
Input(s):
- r1: Left side of sequenced fragments in gzipped fastq format
- r2: Right side of sequenced fragments in gzipped fastq format
Output(s):
- r1: Left side of subsampled fragments without overlap in gzipped fastq format
- r2: Right side of subsampled fragments without overlap in gzipped fastq format