Seqtk - Subsample ReadsΒΆ
Randomly select user-configured number of reads from fastq files
Location
- Filepath: <SnakeLines_dir>/rules/paired_end/reads/preprocess/subsampled/seqtk.snake
- Rule name: seqtk__subsample_reads
Input(s):
- r1: Left side of sequenced fragments in gzipped fastq format
- r2: Right side of sequenced fragments in gzipped fastq format
Output(s):
- r1: Left side of subsampled fragments without overlap in gzipped fastq format
- r2: Right side of subsampled fragments without overlap in gzipped fastq format