Seqtk - Subsample ReadsΒΆ

Randomly select user-configured number of reads from fastq files

Location

  • Filepath: <SnakeLines_dir>/rules/paired_end/reads/preprocess/subsampled/seqtk.snake
  • Rule name: seqtk__subsample_reads

Input(s):

  • r1: Left side of sequenced fragments in gzipped fastq format
  • r2: Right side of sequenced fragments in gzipped fastq format

Output(s):

  • r1: Left side of subsampled fragments without overlap in gzipped fastq format
  • r2: Right side of subsampled fragments without overlap in gzipped fastq format