Phylo - Visualise Phylogenetic TreeΒΆ

Infer phylogenetic relationships between aligned sequences

Location

  • Filepath: <SnakeLines_dir>/rules/shared/reference/report/phylogenetic_tree/phylo.snake
  • Rule name: phylo__visualise_phylogenetic_tree

Input(s):

  • alignment: Aligned sequences in ALN format
  • tree: Phylogenetic tree with distances between sequences

Output(s):

  • svg: Phylogenetic tree in SVG format
  • ascii: Phylogenetic tree in text format

Param(s):

  • model: Model to use for phylo tree generation - see iqtree documentation for more detail