Phylo - Visualise Phylogenetic TreeΒΆ
Infer phylogenetic relationships between aligned sequences
Location
- Filepath: <SnakeLines_dir>/rules/shared/reference/report/phylogenetic_tree/phylo.snake
- Rule name: phylo__visualise_phylogenetic_tree
Input(s):
- alignment: Aligned sequences in ALN format
- tree: Phylogenetic tree with distances between sequences
Output(s):
- svg: Phylogenetic tree in SVG format
- ascii: Phylogenetic tree in text format
Param(s):
- model: Model to use for phylo tree generation - see iqtree documentation for more detail