Custom - Summarize Transcriptomic Counts Into Tsv TableΒΆ

Take transcriptomic counts from several samples and merge them together into a single table.

Location

  • Filepath: <SnakeLines_dir>/rules/paired_end/classification/report/transcripts/count_table/custom.snake
  • Rule name: custom__summarize_transcriptomic_counts_into_tsv_table

Input(s):

  • krns: Count files for each analysed sample in standardised format suitable for Krona graph generation

Output(s):

  • summary_xlsx: Aggregated counts for each transcript in Excel format
  • summary_tsv: Aggregated counts for each transcript in tabular format