Mafft - Align Sequences In ReferenceΒΆ
Align sequences (globally) in the reference fasta file to identify homology regions
Location
- Filepath: <SnakeLines_dir>/rules/shared/reference/alignment/mafft.snake
- Rule name: mafft__align_sequences_in_reference
Input(s):
- reference: Reference sequences in FASTA format
Output(s):
- alignment: Aligned sequences in ALN format
Param(s):
- genbank_ids: List of Genbank identifiers for sequences to download
- email: Inform NCBI who you are to contact you in case of excessive use. Otherwise they may block your access directly.