Custom - Infer Read GroupsΒΆ
Infer sample name, flow cell, barcode and lanes from the input BAM file from Illumina sequencing. Write meta information as read groups to the output bam file.
Location
- Filepath: <SnakeLines_dir>/rules/shared/mapping/postprocess/read_group/custom.snake
- Rule name: custom__infer_read_groups
Input(s):
- bam: Mapped reads in BAM format
Output(s):
- bam: Mapped reads with inferred read groups in BAM format
Param(s):
- infer_script: File path to script that do real job here