Fastuniq - Deduplicate ReadsΒΆ
Remove fragments with identical sequences that are usually consequence of extensive PCR multiplication
Location
- Filepath: <SnakeLines_dir>/rules/paired_end/reads/preprocess/deduplicated/fastuniq.snake
- Rule name: fastuniq__deduplicate_reads
Input(s):
- r1: Left side of sequenced fragments in gzipped fastq format
- r2: Right side of sequenced fragments in gzipped fastq format
Output(s):
- r1: Left side of fragments without duplications in gzipped fastq format
- r2: Right side of fragments without duplications in gzipped fastq format
- pair_description: Auxiliary file with names for paired files
- unzipped_r1: Auxiliary file with unzipped left side of sequenced fragments
- unzipped_r2: Auxiliary file with unzipped right side of sequenced fragments