Custom - Filter Significantly Expressed TranscriptsΒΆ
Select transcripts with significant change in expression according to user specified filters.
Location
- Filepath: <SnakeLines_dir>/rules/paired_end/classification/differential_analysis/filter_significant/custom.snake
- Rule name: custom__filter_significantly_expressed_transcripts
Input(s):
- table: TSV table with statistical evaluation of change in expression
- design: TSV table describing separation of samples into groups for differential expression
Output(s):
- table: TSV table with transcripts with significant change in expression
Param(s):
- max_fdr: Maximal value of fold discovery change for transcript to be reported
- min_fold_change: Minimal value of fold change for transcript to be reported
- reproducible_expression: At least one read must be mapped to transcript in all samples from over-expressed group to be reported