Entrez - Download Sequences By Genbank IdΒΆ

Download sequences from NCBI Genbank database according to the list of enumerated genbank ids

Location

  • Filepath: <SnakeLines_dir>/rules/shared/reference/download/entrez.snake
  • Rule name: entrez__download_sequences_by_genbank_id

Input(s):

Output(s):

  • reference: Downloaded sequences in FASTA format
  • taxonomy: Taxonomies for downloaded sequences

Param(s):

  • method_config: Configuration of entrez. It has to contain list of Genbank identifiers for sequences to download
  • email: Inform NCBI who you are to contact you in case of excessive use. Otherwise they may block your access directly.