Entrez - Download Sequences By Genbank IdΒΆ
Download sequences from NCBI Genbank database according to the list of enumerated genbank ids
Location
- Filepath: <SnakeLines_dir>/rules/shared/reference/download/entrez.snake
- Rule name: entrez__download_sequences_by_genbank_id
Input(s):
Output(s):
- reference: Downloaded sequences in FASTA format
- taxonomy: Taxonomies for downloaded sequences
Param(s):
- method_config: Configuration of entrez. It has to contain list of Genbank identifiers for sequences to download
- email: Inform NCBI who you are to contact you in case of excessive use. Otherwise they may block your access directly.