Bcftools - Build Consensus Sequence

input:

fa = ‘reference/{reference}/{reference}.fa.fai’, vcf = ‘variant/’

output:

bed = ‘reference/{reference}/annotation/{panel}/regions.vardict.bed’,

shell:

Location

• Filepath: <SnakeLines_dir>/rules/shared/consensus/caller/bcftools.snake
• Rule name: bcftools__build_consensus_sequence

Input(s):