Bamtools - Filter FragmentsΒΆ
Remove fragments that do not meet user specified conditions. All values are inclusive (i.e. <= or =>)
Location
- Filepath: <SnakeLines_dir>/rules/shared/mapping/postprocess/filtered/bamtools.snake
- Rule name: bamtools__filter_fragments
Input(s):
- bam: Mapped reads in BAM format
Output(s):
- bam: Filtered reads in BAM format
Param(s):
- min_map_quality: Minimal quality of mapping
- drop_improper_pairs: Eliminate reads that do not pass paired-end resolution