Quast - Quality Report For Assembled ContigsΒΆ

Evaluate genome assembly by standard metrics, such as N50, number of contigs, length of contigs. Metrics are summarised in an HTML, PDF and text reports.

Location

  • Filepath: <SnakeLines_dir>/rules/paired_end/assembly/report/quality_report/quast.snake
  • Rule name: quast__quality_report_for_assembled_contigs

Input(s):

  • contigs: Assembled configs in fasta format

Output(s):

  • txt: Quality report statistics in text format suitable for automated evaluation
  • html: Quality report statistics in HTML format
  • pdf: Quality report statistics in Pdf format